Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp440 days ago
Comment on "Short-read assembly using Spades !"
...repeated until a satisfactory assembly is achieved. These are the general steps for short-read assembly using SPAdes. However, the specific parameters used for SPAdes and the evalu...457 days ago
457 days ago
Comment on "Short-read assembly using Spades !"
...contigs.fasta. You can view the contigs using a text editor or a genome browser. SPAdes also provides several options for tuning the assembly parameters, such as adjusting the k-mer...463 days ago
Comment on "Basic command-line to run BLAST"
...NCBI GenBank, RefSeq, and non-redundant databases. Choose the database that is most appropriate for your search. Set the parameters: BLAST has many different parameters that can be adjusted to custo...465 days ago
Comment on "Sibelia: A comparative genomics tool"
...h the "loose" simplification parameters. There are two another simplification parameters sets, called "fine" and "far"...), try to set simplification parameters manually (see section "Fine t...increase K and D. The "loose" parameters set has 4 stages: | K...1327 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
....04] -x --mis-rate [FLOAT] Maximum error rate of mismatch within reads. [0.04] -T --read-type [STR] Specifiy the type of reads and set multiple parameters unless overriden. [null] (Ill...2165 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...tches of the size specified in megabytes. Value <= 0 loads the entire file. [1024] General-purpose pre-set options: -x, --preset STR Pre-set parameters to increase sensitivity for d...2334 days ago
2600 days ago
Comment on "Bio++ : C Language libraries for your biological need"
...uild a phylogenetic tree according to several model of evolution and reconstruction methods).bppML (Optimize a phylogenetic tree and other model parameters according to maximum likeliho...3868 days ago