Results for "ultrafast"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
...C: Disk-based k-mer counting on a PC. Deorowicz, S., Debudaj-Grabysz, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Kraken: ultrafast metagenomic sequence classifi...1075 days ago
Bookmarks
- Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://...
3015 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR e...2979 days ago
- +6 more Bookmarks
Top-level pages
Commercial and public next-gen-seq (NGS) software
...ssemble to a reference BFAST - Blat-like Fast Accurate Search Tool. Written by Nils Homer, Stanley F. Nelson and Barry Merriman at UCLA.Bowtie - Ultrafast, memory-efficient short read...3547 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...dhi Center for Atomic Research, Kalpakkam The Institute of Mathematical Sciences M. S. Swaminathan Research Foundation National Centre for Ultrafast Processes National Institut...2598 days ago
- +3 more Top-level pages
Comments
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do no...2203 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3676 days ago
