Results for "NGS analysis"
Bio-Scripts
(JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1266 days ago
Blast result parser with Perl and Bioperl
...es, and identical # The results are tab-deliminated and ready for import into a spreadsheet program for browsing and further analysis. # use strict; use warnings; use Bio::SearchIO; # Usage in...2963 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...2189 days ago
Install Parrot Virtual Machine !
........................no. auto::coverage - Are coverage analysis tools installed...Negati...r compiler support __builtin_expect.........yes. auto::warnings - Detect supported compiler warnings.................done. gen::config...1586 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...embly/transrateSTAT/Trinity/contigs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis results to assemblies.csv
2172 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wg...ne metrics for the given BaseCalling analysis directory. ExtractIllu...-------------------------- Coverage Analysis:...Tools that perform metagenomic analysis, e.g. microbial community com...
2124 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ----------------...ossibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...ossibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...2083 days ago
Setting up falconUnzip conda environments for genome assembly !
...$ conda deactivate ➜ Analysis_Results source activate denovo_asm (denovo_asm) ➜ Analysis_Results conda install pb-asse...e currently available SMRT(R) Analysis builds. While # # efforts ha...e currently available SMRT(R) Analysis builds. While # # efforts ha...2039 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Down...s materials ... Biostatistics is an innovative field that involves the design, analysis, and interpretation of data f...1560 days ago
- jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ sudo docker system df TYPE...--autoConTAMPR v0.1-- Citation - autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks Licen...
1558 days ago
