2150 days ago
Installing Porechop on Ubuntu !
...ckages/porechop/__init__.py to __init__.cpython-36.pyc running install_egg_info running egg_info creating porechop.egg-info writing porechop.egg-info/PKG-INFO writing dependency_links to porechop....2133 days ago
Bash script to alignment of short reads against reference genome !
...er in place of the file name indicates this) and converts to BAM. #sorting the BAM file: sambamba sort SRR1770413.raw.bam --- sort the BAM file, writing it to .sorted.bam. #marking...1586 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
.../Tools/i-adhore-3.0.01/src/SvgWriter.cpp:24:8: warning: ‘%x’ directive writing 1 byte into a region of size.../Tools/i-adhore-3.0.01/src/SvgWriter.cpp:24:8: warning: ‘%x’ directive writing 1 byte into a region of size...1230 days ago
1190 days ago
Commandline for paired end reads simulation with BBMap !
...ed, reads=100k, length=250, mininsert=400, maxinsert=600, gaussian] Writing reference. Executing dna.Fas...mixed.fa, 1, writeinthread=false, genscaffoldinfo=true, retain, waitforwriting=false, gz=true, maxlen=536670...1017 days ago
Tadpole is 250x faster than SPADes assembler !
...as fasta versus 2-column tsv. mincounttodump=1 Only dump kmers with at least this depth. showstats=t Print assembly statistics after writing contigs. Prefiltering para...1003 days ago