Download the gff files from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # Create a Directory mkdir genome_gff cd genome_gff # Look for genome assembly summary and extract the URL #...2567 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses p...'trimlimit=i', 'prefix=s'); # process remaining command line arguments (hopefully onl...=> 1, -message => "Error: Unknown comma...2353 days ago
Remove duplicate lines with perl
#! perl -sw use strict; my %lines; #open DATA, $ARGV[0] or die "Couldn't open $ARGV[0]: $!\n"; while () { print if not $lines{$_}++; } __DATA__ apple apple plum vinegar apple banana banana banana apple2337 days ago
Extract the values between to user defined string with Perl
#!/usr/bin/perl -w use strict; while () { process..._ XXXX YYYY START These are the first set of lines which are to be extracted E...XXX ZZZ YYY START These are the second set of lines which are to be extracted E...2337 days ago
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Plot custom gene density with R
library(karyoploteR) pp2294 days ago
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2198 days ago
2195 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic languages jit@jit-H...process is completely automated, unless you passed in the `--ask' flag on the comma...1581 days ago