Pack a perl program with their dependencies on Ubuntu !
...axdump files !By Jit 37 days ago extracttaxdumpreadmetaxonomyncbi This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi.nih.gov/pub/taxonomy/...1526 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Name Size Date Modified ARCHIVE/...ial_requests/ 18/04/2020, 00:15:00 737 B 09/06/2011, 05:30:00 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz ftp://ftp.ncbi.nlm.nih.gov/gene/D...1417 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz % Total % Received % Xferd Average Speed Time Time Time Curre...1230 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...party database for Alienomics\n"; #Install NCBI taxdump my $url = 'ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy...__ # BlastDB download my $result = `mkdir taxdump; cd taxdump; wget ftp://ftp.ncbi.nlm.nih.gov/pub/ta...1176 days ago
1174 days ago
Command line to create blast uniref database !
...blast' program. The 'blastpgp' program is available in the legacy NCBI BLAST package (no longer supported), which is available from the NCBI's FTP site: ftp://ftp.ncbi.nlm.nih.gov/blast/...965 days ago
Command line to download blast database / protein
...e file #Database location - NCBI where all databases are available ftp://ftp.ncbi.nlm.nih.gov/blast/db/ h...t, PIR, PDF, PDB, and NCBI RefSeq #First run this to download wget 'ftp://ftp.ncbi.nlm.nih.gov/blast/...959 days ago
Download desire version of Blast software !
#Create a directory and wget it wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-x64-linux.tar.gz #unpacking blast tar -zxvf ncbi-blast-2.6.0+-x64-...958 days ago
Downloading mmseqs databases !
...https://uniprot.org - NR Aminoacid - https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA - NT Nucleotide - https://ftp.ncbi.nlm.nih.gov/blast/db/FAS...957 days ago
Bash script to simulate a genome !
...ference https://github.com/chhylp123/hifiasm/issues/33 # Use Drosophila melongaster PacBio assembly cd /genetics/elbers/test/fly2 wget https://ftp.ncbi.nlm.nih.gov/genomes/all/...933 days ago