Results for "miRNA target gene"
Bio-Scripts
Perl script to convert GFF 2 FASTA !
#!/usr/bin/perl use strict; use warnings;...">$ARGV[2].cdna.fasta" ); my $outfile_gene = Bio::SeqIO->new( -format => 'fasta', -file => ">$ARGV[2].gene.fasta" ); my $outfile_upstre...s the stop codon) # gene - the entire gene sequence (including UTRs and...2182 days ago
- ➜ Tools git:(master) ✗ git clone h...ound -- Configuring done -- Generating done -- Build files have...ild Scanning dependencies of target zlibstatic [ 1%] Building C...library libz.a [ 16%] Built target zlibstatic Scanning dependen...y libbamtools.a [ 56%] Built target BamTools-static Scanning d...
2142 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SN...ark tools are run valid targets are: LOCAL: run u...ay be specified to output the generated command line without runni...cing artifacts. CollectTargetedPcrMetrics (Picard)...r Generates recalibration table for...
2118 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone ht...[nyae]? n echo '/* Default config.h generated by Makefile */' > config.h...sion denied Makefile:447: recipe for target 'installdirs' failed make: *...scards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifier...2062 days ago
- let width = $(window).width() - 20, hei...[ { source: { id: 'january', start: 1, end: 12 }, target: { id: 'april', start: 18, en...{ source: { id: 'february', start: 20, end: 28}, targ...
1567 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@j...sage table derived from highly‐expressed A. gambiae genes is appended below. Biote...he human genome reveals that about sixty percent of genes are conserved (Adams et al....1554 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Name Size Date Modified...ASN_BINARY/ 03/07/2020, 07:49:00 GENE_INFO/ 03/07/2020, 07:48:00...0:00 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz ftp://ftp.nc...med.gz ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz ftp://ft...1445 days ago
Bash script to extract intronic fragments !
#To obtain introns, we simply need the gene and exonic coordinates; #by subtracting the exonic regions from the...region. gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $3=="gene" {print $1,$4-1,$5}' | bedto...1408 days ago
Bash script to get intergenic region from genome files !
#For the intergenic region, we will require the size of the chromosomes. wget http:...p xxx.chrom.sizes gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $3=="gene" {print $1,$4-1,$5}' | bedto...1408 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...34") -- Configuring done -- Generating done -- Build files have...j 4 Scanning dependencies of target bmp Scanning dependencies of target alignment [ 3%] Building CX...conda3/envs/wgd/./API/iADHoRe/gene.pm -- Installing: /home/urbe...stset/datasetI/arath_2_3_beta/genes.txt -- Installing: /home/ur...1246 days ago
