Comment on "Genome in a Bottle (GIAB) Consortium"
...increasing the diversity of germline reference samples and developing paired tumor-normal cell lines. Workshops:The consortium was initiated in a set of meetings in 2011 and 2012,...1620 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...s to compare two vertebrate genomes); (ii) it is easy to use (a unique parameter D, which is really simple to handle, needs to be set) and (iii) it provides a rich set of graphic outputs (notably a...1654 days ago
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Comment on "Installing Porechop on Ubuntu !"
...ed.fa Loading reads/media/urbe/MyDDrive/ONTdata/allONT/allONT.fasta1,634,477 reads loaded Looking for known adapter sets10,000 / 10,000 (100.0%) Best read Best start read end Set %ID %ID SQK-NSK007 96.6 81.8...2166 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...nd reference. [0.04] -x --mis-rate [FLOAT] Maximum error rate of mismatch within reads. [0.04] -T --read-type [STR] Specifiy the type of reads and set multiple parameters unless ov...2183 days ago
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Comment on "Run miniasm assembler on nanopore reads !"
...quick and dirty of what was done: 1 Run minimap: This uses a pre-built set of defaults (the ava-pb&...> 20170918_oly_pacbio_miniasm_reads.fasta 4 Run minimap with default settings Using the default setti...2228 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...s. Value <= 0 loads the entire file. [1024] General-purpose pre-set options: -x, --preset STR Pre-set parameters to inc...If 0, value will be dynamically determined. If < 0, no limit is set. [0] -q, --reg-reduce INT Att...2352 days ago
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