Results for "statistics"
Bio-Scripts
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...eqIO', 'FindBin', 'File::Remove', 'Capture::Tiny', 'File::Temp', 'File::Spec::Functions', 'Statistics::Multtest', 'File::Path', 'Statistics::Distributions', 'Getopt...1201 days ago
- ...eqIO', 'FindBin', 'File::Remove', 'Capture::Tiny', 'File::Temp', 'File::Spec::Functions', 'Statistics::Multtest', 'File::Path', 'Statistics::Distributions', 'Getopt...
1199 days ago
Perl script to check modules installed !
...eqIO', 'FindBin', 'File::Remove', 'Capture::Tiny', 'File::Temp', 'File::Spec::Functions', 'Statistics::Multtest', 'File::Path', 'Statistics::Distributions', 'Getopt...1196 days ago
Tadpole is 250x faster than SPADes assembler !
...mers and counts as fasta versus 2-column tsv. mincounttodump=1 Only dump kmers with at least this depth. showstats=t Print assembly statistics after writing contigs. Pre...1016 days ago
- ...list of GI's [String] Optional -U Use lower case filtering of FASTA sequence [T/F] Optional default = F -t Use composition based statistics [T/F] default = T -L...
990 days ago
Perl script to parse blast results and plot basic stats !
...print "---------------------------\n"; } # Calculate additional statistics my $avg_percent_identity = c...culate_summary_stats(\@blast_entries, 'BITSCORE'); # Print summary statistics print "Average Percent Ident...134 days ago
Perl script to calculate the basic stats of the assembled genome !
...at => 'fasta'); # Variables for computing statistics my $total_length = 0; my $n...} @contig_lengths; # Calculate additional statistics my $min_contig_length = $con...ontent($input_file); # Print the computed statistics and information print "Genom...134 days ago
Python script for basic stats of the assembled genome !
from Bio import SeqIO import statistics # Input file containing the...a' # Variables for computing statistics total_length = 0 num_contig...True) # Calculate additional statistics min_contig_length = min(cont...age, 2) # Print the computed statistics and information print("Genom...134 days ago
Python script to calculate basic genome stats !
...genome_stats(fasta_file): # Initialize variables to store genome statistics genome_length = 0 g...enome_length) * 100 if genome_length > 0 else 0 # Print genome statistics print(f"Genome Length: {...4 days ago
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