Results for "vi"
Bio-Scripts
Install ATOM editor on Elemantory OS / Ubuntu
...ional packages will be installed: gconf-service gconf-service-backend gconf2-common libgc...ntu.com/ubuntu bionic/universe amd64 gconf-service-backend amd64 3.2.6-4ubuntu...ing up atom (1.54.0) ... Setting up gconf-service-backend (3.2.6-4ubuntu1) .....1203 days ago
Install htop in elementary/Ubuntu OS !
...l be used. Get:1 http://in.archive.ubuntu.com/ubuntu bionic/main amd64 htop amd64 2.1.0-3 [80.0 kB] Fetched 80.0 kB in 0s (239 kB/s) Selecting previously unselected package htop....1179 days ago
- ...a ragout Collecting package metadata (current_repodata.json): done Solving environment: failed with initial f...repodata source. Collecting package metadata (repodata.json): done Solving environment: done ==>...
1175 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up impo...1164 days ago
Install NCBI entrez-direct and esearch using conda !
$ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 13.9...1129 days ago
Download genome using NCBI esearch command line !
...on #conda install -c bioconda fastani fastANI -q seq1.fa -r seq2.fa --visualize -o fastani.out #Plot using sequences Rscript plotSeq.R seq1.fa seq2.fa fastani.out.visual1129 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pd...ery_fasta=commandArgs(TRUE)[1] subject_fasta=commandArgs(TRUE)[2] fastANI_visual_file=commandArgs(TRUE)[3]...1129 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda/label/cf201901 canu Collecting package metadata (current_repodata.json): done Solving environment: done ==>...
1082 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda shasta Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1082 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda csvtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1082 days ago
