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Results for "5"

Bio-Scripts

• • Jit@jit.aber

  

  Install grabseqs with conda !

  (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1277 days ago

• • Jit@jit.aber

  

  Install fastqc using conda !

  (JitMetaENV) ➜ JitMeta conda install -c bioconda fastqc Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1276 days ago

• • Jit@jit.aber

  

  trimmomatic command !

  ...etaENV) ➜ fastQC_out trimmomatic SE -phred33 SRR5322499_1.fastq out.trimmed.fastq LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 TrimmomaticSE: Started with arguments: -phred33 SRR5322499_1.fastq out.trimmed.fas...

  1276 days ago

• • Jit@jit.aber

  

  Install spades using conda !

  (JitMetaENV) ➜ fastQC_out conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1276 days ago

• • Jit@jit.aber

  

  Install assembly-stats with conda !

  (JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1276 days ago

• • Jit@jit.aber

  

  Install Kraken2 using conda !

  (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen so...

  1276 days ago

• • Jit@jit.aber

  

  Install quast using conda !

  ...rrent_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2.13.1-h7e3eb15_1002 icu 68.1-h58526e2_0 --> 67.1-he1b5a44_0...

  1275 days ago

• • Jit@jit.aber

  

  Install prokka using conda !

  (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen...

  1275 days ago

• • Jit@jit.aber

  

  Genome assembly Treasure Hunt

  ...TCTTTCAGAT AGCCGGACCT TATGATCATT TCATTAGGCG AGGCGGAGCT HINT: There is NO sequencing errors HINT: Overlaps are at least of length 5...

  1275 days ago

• • Jit@jit.aber

  

  Install seqtk using conda !

  (JitMetaENV) ➜ META_PE conda install -c bioconda seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1275 days ago

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