Results for "B"
Bio-Scripts
➜ bin git:(master) ✗ ./fastq-dump...table dump) --table Table name wit...spot-groups Filter by SPOT_GROUP (member): name[,....an 1 file, each of which will be suffixed...le-multithreading disable multithreading -h|--hel...2173 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2172 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-...nell, Rob Patro, Julian Hibberd, and Steve Kelly DESCR...--threads= Number of threads to use (default:...INFO] 2018-07-13 14:54:34 : n bases 1479383...
2170 days ago
- ...es are dictionary keys in sample_links. extract them to a list we can use below SAMPLES=sample_links.key...he download link directly from the dictionary download_link = lambda wildcards: sample_links[wil...
1563 days ago
Installing Porechop on Ubuntu !
...pying porechop/adapters.py -> build/lib/porechop copying por...orechop/version.py -> /home/urbe/anaconda3/lib/python3.6/site...porechop.egg-info to /home/urbe/anaconda3/lib/python3.6/site...a strong match for the barcode on both their start...2153 days ago
- ...nning facheck" echo "/home/urbe/Tools/Reapr_1.0.18/reapr fac...ed.iteration1.fa out.smaltmap.bam out.pipeline" cd out.pip....18/reapr score -P 5 00.assembly.fa.gaps.gz 00.in.bam 01.sta...ne] Running fcdrate" /home/urbe/Tools/Reapr_1.0.18/reapr fcd...
2146 days ago
Perl script to find palindromic pattern !
#!/usr/bin/perl use strict; use warnings; use strict...( 1 .. length( $in ) -2 ) { next unless substr( $in, $p1, 1 ) eq $invert{ substr $in, $p1+1, 1 }; my $...%s%s at %d\n", ' 'x($p1-$pals), substr( $in, $p1-$pals, ($pals+1)...2146 days ago
- ...ervalTree Running setup.py bdist_wheel for PyIntervalTree...done -- Generating done -- Build files have been written t..._and_callers/Sniffles-1.0.5/lib/bamtools-2.3.0/src/api/intern...lers/Sniffles-1.0.5/src/print/BedpePrinter.cpp:70:41: warning...
2146 days ago
Install Python locally on shared Linux server !
...here to put the #related output of make command, by default it is in the /usr/lo...irectory. #Here comes another important step. By the default, if we type pyth...thon #it should show you the path to the python binary file, which is located i...2145 days ago
Perl script to extract sequence by Ids from multifasta file !
#!/usr/bin/perl -w use strict; my $idsfile = "$ARGV[0]"; my $seqfile = "$ARGV[1]"...le() { chomp; $ids{$_} += 1; } close FILE; local $/ = "\n>"; # read by FASTA record open FASTA,...2143 days ago
