Results for "Install"
Bio-Scripts
Install StringTie on ubuntu / Linux !
...ification of RNAseq data. The binary distributions are available so to install we can just download this dis...ngtie-1.3.0.Linux_x86_64/stringtie ~/workspace/bin/stringtie # test installation ~/workspace/bin/stringt...846 days ago
Install Varscan on Ubuntu / Linux !
...workspace/bin. As with the other java programs which have already been installed in this section we can invoke Varscan via java -jar. # Install Varscan cd ~/workspace/bin...846 days ago
- ...reate -f gatkcondaenv.yml -p ~/workspace/bin/conda/gatk # make symlink ln -s ~/workspace/bin/gatk-4.0.2.1/gatk ~/workspace/bin/gatk # test installation source activate ~/works...
835 days ago
Bash command to explore assembly summary genbank !
wget https://ftp.ncbi.nlm.nih.gov/genomes/genbank/assembly_summary_genbank.txt pip3 install csvkit csvcut -t -K 1 -c 'excluded_from_refseq' assembly_summary_genbank.txt \ | tail -n +2 | tr ";" "\n" \ | sed -e 's/^ //' -e 's/ $//' | grep -v '""' \ | sort | uniq -c | sort -nr791 days ago
- ...ing package was automatically installed and is no longer required:...g additional packages will be installed: libgsl23 libgslcblas0...slcblas0 0 upgraded, 3 newly installed, 0 to remove and 1 not upgr...les and directories currently installed.) Preparing to unpack .../...
688 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data441 days ago
