Results for "5"
Bio-Scripts
(JitMetaENV) ➜ assembly conda install -c bioconda bwa Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1278 days ago
Download minikraken database !
...Dload Upload Total Spent Left Speed 100 5661M 100 5661M 0 0 25.3M 0...atabase100mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/database150mers.kmer_distrib minikraken...1277 days ago
- (JitMetaENV) ➜ day3 conda install -c bioconda krona Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2020.12.5-py36h5fab9bb_1 Proceed ([y]/n)?
1277 days ago
- (JitMetaENV) ➜ day3 conda install -c bioconda maxbin2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen so...
1277 days ago
Create random 10000 SNPs in genome !
...p_count 10000 -prefix simuSNP [Sun Jan 10 16:05:57 2021] Starting simuG .....on titv_ratio has been specified: titv_ratio = 0.5 [Sun Jan 10 16:05:57 2021]...simuSNP.refseq2simseq.SNP.vcf [Sun Jan 10 16:05:57 2021] Done! :)...1274 days ago
Create random 1000 INDEL in genome !
.../translocation simulation. This simulation use the random seed: 1678440514 The option indel_count h...ze_powerlaw_constant has been specified: indel_size_powerlaw_constant = 0.5 [Sun Jan 10 16:14:00 2021]...1274 days ago
Create random 5 inversions in genome !
...refseq simuCNV.simseq.genome.fa -inversion_count 5 -prefix simuINV [Sun Jan 1...sion_count has been specified: inversion_count = 5 The option inversion_min_siz...n the following parameters: > inversion_count = 5 > inversion_min_size = 1000...1274 days ago
Create random 2 translocations in genome !
...2 -prefix simuTRANS [Sun Jan 10 17:12:58 2021] Starting simuG .. [Sun Jan 10 17:12:58 2021] Check specified optio...slocation_count = 2 [Sun Jan 10 17:12:58 2021] Introducing random Tr...q.translocation.vcf [Sun Jan 10 17:12:58 2021] Done! :)1274 days ago
- ...ent already satisfied: six>=1.5.2 in /home/urbe/.local/lib/py...Collecting fastcluster==1.1.25 Downloading fastcluster-1.....11.2-py2.py3-none-any.whl (125 kB) |██████████████████...l for PyYAML: filename=PyYAML-5.3.1-cp36-cp36m-linux_x86_64.w...
1270 days ago
- ...main 3 KB gffread-0.12.1 | h8b12597_0 635 KB bioconda libgcc-ng-9...##################################### | 100% libgcc-ng-9.1.0 | 5.1 MB | ###################...
1266 days ago
