Results for "PA"
Bio-Scripts
Converting from Windows-style to UNIX-style line endings with dos2unix
Lenovo-ideapad-320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for bioqueen: Reading package lists... Done Building...nformation... Done The following packages were automatically inst...ion, 1,267 kB of additional disk space will be used. Get:1 http:/...1232 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...tom-amd64.deb' The following packages were automatically inst...bgconf-2-4 The following NEW packages will be installed: a...lecting previously unselected package gconf2-common. (Reading....0.1) ... #Now you can add packages in it (base) bioque...1231 days ago
Parse the NCBI taxonomy database with Perl !
...-nodesfile=> "taxdump/nodes.dmp", -namesfile=> "taxdump/names.dmp"); #to check #parseTax('homo_sapiens', 'metazo...1227 days ago
Perl script to run awk inside perl
...$'.$1.'$2;' while $ARGV[0] =~ /^([A-Za-z_0-9]+=)(.*)/ && shift; # process any FOO=bar switches $, = ' '; # set output field separator $\ = "\n"; # set output record separator while () { chomp; #...1218 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...'Statistics::Multtest', 'File::Path', 'Statistics::Distrib...here print "\nDownloading third party database for Alienomics\n"...elease_138_1/Exports/SILVA_138.1_LSUParc_tax_silva.fasta.gz'; my $s...cho -e "\nInstall R package install.packages('Ckmeans.1d.dp') \n"...1215 days ago
- ...', 'File::Spec::Functions', 'Statistics::Multtest', 'File::Path', 'Statistics::Distrib...end 'BEGIN' block #Bash script else here print "\nDownloading third party database for Alienomics\n"...
1213 days ago
Perl script to check modules installed !
...'FindBin', 'File::Remove', 'Capture::Tiny', 'File::Temp', 'File::Spec::Functions', 'Statistics::Multtest', 'File::Path', 'Statistics::Distrib...1210 days ago
Install htop in elementary/Ubuntu OS !
neelam@neelam-Lenovo-ideapad-320-15ISK:~$ sudo apt-get install htop Reading package lists... Done Building...mation... Done The following packages were automatically inst...move them. The following NEW packages will be installed: h...lecting previously unselected package htop. (Reading database...1207 days ago
- ...tall -c bioconda ragout Collecting package metadata (current_repoda...h next repodata source. Collecting package metadata (repodata.json)...? y Downloading and Extracting Packages sibelia-3.0.7 |...######################## | 100% Preparing transaction: done Verify...
1203 days ago
Install NCBI entrez-direct and esearch using conda !
...da install -c bioconda entrez-direct Collecting package metadata (current_repoda...oceed ([y]/n)? y Downloading and Extracting Packages entrez-direct-13.9 |...##################################### | 100% Preparing transaction: done Verify...1156 days ago
