Bash script to extract intronic fragments !
...obtain introns, we simply need the gene and exonic coordinates; #by subtracting the exonic regions from...FS="\t";} $3=="gene" {print $1,$4-1,$5}' | bedtools sort | bedtools subtract -a stdin -b my_exon.bed.gz...1402 days ago
Bash script to handle Multifasta files
...esidues to uppercase in a FASTA sequence file $ awk 'BEGIN{FS=" "}{if(!/>/){print toupper($0)}else{print $1}}' input.fasta > output.fasta #Rearrange FASTA sequences according...1394 days ago
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Print the screenshot of read coverage remotely !
#Chrom_2:9700000-9760000 ASCIIGenome -ni --fasta A_vaga.NDPD.fasta -r Chrom_2:9700000-9760000 -x "save >> test.pdf" A_vaga.NDPD.fasta.out.sam.bam.sorted.bam1320 days ago
Install SibeliaZ in your Linux cluster !
(jitenv) jitendra@Bathymodiolus:~$ conda install -c bio...environment location: /home/jitendra/.conda/envs/jitenv added...The following packages will be DOWNGRADED: anaconda...################## | 100% Preparing transaction: done Verifying tran...1269 days ago
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