Results for "5"
Bio-Scripts
...ities, 4 = flat query-anchored, no identities, 5 = query-anchored no identitie...ed alignment (in bits) [Integer] default = 15 -N Number of bits to trig...ed alignment (in bits) [Integer] default = 25 -O SeqAlign file ('Believ...1013 days ago
Get the Linux system information !
#!/bin/bash # while-menu-dialog: a menu driven system information program DIALOG_CANCEL=1 DIALOG_ESC=255 HEIGHT=0 WIDTH=0 display_result() { dialog --title "$1" \...1011 days ago
- ...---------|----------------- _openmp_mutex-4.5 | 1_gnu...22 KB conda-4.10.3 | py38h578d9bd_2 3.0 MB conda...bioconda/linux-64::hhsuite-3.3.0-py38pl526h6ed170a_1 libgomp...
1005 days ago
Downloading mmseqs databases !
...Aminoacid yes https://www.uniprot.org/help/uniref - UniRef50 Aminoacid...am-b-is-released - eggNOG Profile - http://eggnog5.embl.de - dbCAN2...1005 days ago
- ...build=1 \ seed=1 \ ref=GCA_003401745.1_ASM340174v1_genomic.fna_upp...mreads.sh build=1 \ ref=GCA_003401745.1_ASM340174v1_genomic.fna_upp...ev/null # use KmerGenie 1.7051 to get an idea of k-mer with...sh=t \ pacbio=t pbmin=0.13 pbmax=0.15 \ coverage=15 paired=f \ ga...
991 days ago
Installing Covid19 Environment !
...00% datrie-0.8.2 | 152 KB | ####################...100% pthread-stubs-0.4 | 5 KB | ###################...########## | 100% spades-3.15.3 | 48.0 MB | ######...############# | 100% zstd-1.5.0 | 490 KB | ###...986 days ago
Bash script to simulate a genome !
...gov/genomes/all/GCA/003/401/745/GCA_003401745.1_ASM340174v1/GCA_003401745.1...oid.vcf.gz \ out=GCA_003401745.1_ASM340174v1_genomic.fna_upp...\ seed=1 \ ref=GCA_003401745.1_ASM340174v1_genomic.fna_upp...w=t seed=1 \ ref=GCA_003401745.1_ASM340174v1_genomic.fna_upp...981 days ago
Rules to run fastp / Snakemake !
...rimmed.fastq", html=RESULTS + "/fastq_trimmed/{sample}.html", json=RESULTS + "/fastq_trimmed/{sample}.json" threads: 5 log: RESULTS +...964 days ago
Split the string with underscore and store values in array with AWK !
more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}' #Other extraction more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}'> enriched_ids_list awk 'NR==FNR{tgts[$1]; next} $1 in tgts' enriched_ids_list result/GO.out > enriched_GO.out.xls957 days ago
Extract the values using ids !
...file1 file2 Look: $ cat file1 11002 10995 48981 79600 $ cat file2 10993 item 0 11002 item 6 10995 item 7 79600 item...item 7 224325 item 7 84156 item 6 572546 item 7 693661 item...957 days ago
