Converting from Windows-style to UNIX-style line endings with dos2unix
Lenovo-ideapad-320-15ISK:~/Downloads/abc/bin$ sudo apt in...lowing packages were automatically installed and are no longer required: gir1.2-vt...ix 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 351 k...1236 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...ng state information... Done Note, selecting 'atom' instead o...tomatically installed and are no longer required: gir1.2-vt...... Processing triggers for gnome-menus (3.13.3-11ubuntu1.1)...e Prefix an option with `no-` to set it to false such as...1235 days ago
Parse the NCBI taxonomy database with Perl !
..."; # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile...-nodesfile=> "taxdump/nodes.dmp",...$tree_functions->get_lineage_nodes($nam); my $lineage = $tre...$tree_functions->get_lineage_nodes($nam); return 1 if ( grep...1232 days ago
Perl script to get all the descendent in a tree !
use warnings; use Bio::DB::Taxonomy; #Rotifera 10190 # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile',...ry=> "taxdump", -nodesfile=> "taxdump/nodes.dmp",...1223 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...h::Round', 'File::Find', 'Bio::DB::Taxonomy', 'Pod::Usage',...if($@) { print qq{\n Module $_ NOT OK!\n }; #exit...taxdump; wget ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz; tar xzfp ta...1219 days ago
1217 days ago
Perl script to check modules installed !
...Statistics::R', 'Math::Round', 'File::Find', 'Bio::DB::Taxonomy', 'Pod::Usage',...t->validate($_) }; if($@) { print qq{\n Module $_ NOT OK!\n }; #exit...1214 days ago
Install htop in elementary/Ubuntu OS !
neelam@neelam-Lenovo-ideapad-320-15ISK:~$ sudo apt-get i...were automatically installed and are no longer required: gir1.2-vt...1 newly installed, 0 to remove and 0 not upgraded. Need to get 80.0...ntu0.1) ... Processing triggers for gnome-menus (3.13.3-11ubuntu1.1)...1211 days ago
1207 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up impo...1195 days ago