Results for "r"
Bio-Scripts
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/ $ curl -O https://repo.anaconda.com/archive/Anaco...0-py37_0 ... installing: colorama-0.4.1-py37_0 ... installi...9.0-py37_0 ... installing: partd-0.3.10-py37_1 ... installi...1614 days ago
Bash command to install Miniconda !
...e to Miniconda3 4.7.12 In order to continue the installati...n below [/data/sata_data/workshop/wsu29/miniconda3] >>>....3=py37h14c3975_0 - pycparser==2.19=py37_0 - pyopen...dm pkgs/main/noarch::tqdm-4.36.1-py_0 urllib...1614 days ago
Bash command to install bwa, samtools, picard !
...Collecting package metadata (repodata.json): done Solving environment: - The environment is...19.1.23-0 --> 2020.1.1-0 certifi...6447c_0 105 KB curl-7.67.0 |...95d_15 25 KB gfortran_impl_linux-64-7.3.0|...1614 days ago
Bash command to install GATK, Bedtools and SnpEff !
...Collecting package metadata (repodata.json): done Solving environment: done ## Package Pla...rcolorbrewer-1.1_2 | r36h6115d3f_0 62 KB...eval pkgs/r/linux-64::r-lazyeval-0.2.2-r36h96ca727_0...#################### | 100% r-rlang-0.3.4 | 1.0 MB...1614 days ago
- #More at https://developer.nvidia.com/cuda-downloads?target_os=Linux&target_arch=x86_64&target_distro=Ubuntu&target_versi...cuda-ubuntu1804.pin /etc/apt/preferences.d/cuda-repository-pi...15:25:50 (4.67 MB/s) - ‘cuda-repo-ubuntu1804-10-2-local-10.2...
1612 days ago
- $ sudo apt install npm Reading package lists... Done Building dependency tree Reading state information... Done The following...ubuntu.com/ubuntu bionic/universe amd64 node-mime all 1.3.4-1...ule (1.0.0-1) ... Selecting previously unselected package no...
1612 days ago
- $ sudo apt-get install rakudo [sudo] password for jit: Reading package l...be installed: libjs-angularjs libtommath1 moarvm nqp Sug...ubuntu.com/ubuntu bionic/universe amd64 moarvm amd64 2018.03+...1_amd64.deb ... Unpacking moarvm (2018.03+dfsg-1) ... Selec...
1610 days ago
- ...f.git Cloning into 'zef'... remote: Enumerating objects: 218, done. remote: Counting objects: 100%...ote: Total 10255 (delta 115), reused 153 (delta 81), pack-reu...nstall . ===> Testing: zef:ver:auth:api ===> Testing [OK] f...Updating p6c mirror: https://raw.githubusercontent.com/ugexe...
1610 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to delete the adjacent repeated character .... $string='A...o ATGC $string =~ s/(\w)\1/$1/g; print $string; #For more help...gi #And finally, if you wanted to trim any number of duplicates do...1609 days ago
Install Nucmer on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install mummer [sudo] password for jit: Rea...s... Done Building dependency tree Reading state infor...will be installed: gawk mummer 0 upgraded, 2 newly installe...ild1 [401 kB] Get:2 http://in.archive.ubuntu.com/ubuntu bionic...1609 days ago
