Results for "Env"
Bio-Scripts
#Create a conda environment. #Install a Python packa...ing conda. $ conda create -n myenv $ conda create -n myenv Python=3.7 $ conda env cre...nment for Use $ conda activate myenv #Update Conda Environments...Installed Dependencies Within an Environment (myenv) $ conda list...1012 days ago
Installing Covid19 Environment !
...0-15ISK:~/vinodLab/Genepi$ conda env create -f covid19-environment.yml Collecting packa...a (repodata.json): done Solving environment: done Downloading...tabases is /home/vikas/anaconda3/envs/covid19-genepi/opt/krona/tax...o done # # To activate this environment, use # # $ cond...974 days ago
- $ pangolin --update #Major update conda activate pangolin git pull conda env update -f environment.yml pip install . re-installs pangolin.
953 days ago
Installing SEVA environment in Conda !
...ase) [jnarayan@hn1 SEVA_codes_and_files]$ conda env create -f SEVA.yaml Collect...package metadata (repodata.json): done Solving environment: done Downloading...cuting transaction: done # # To activate this environment, use # # $ cond...888 days ago
- ...K through conda which is a package, environment, and dependency manag...e conda basically creates a virtual environment from which to run sof...we must first start up the virtual environment with the command sour...e/bin/gatk # to exit the virtual environment source deactivate
862 days ago
- #!/usr/bin/env Rscript library(RCircos) # usage: Rscript make_circos.r # parse args args = commandArgs(trailingOnly=TRUE) sv.file
350 days ago
Raku script to find overlaps between two bed files !
#!/usr/bin/env raku # Check if the correct number of arguments are provided if @*ARGS.elems != 2 { say "Usage: ./compare_bed_files.raku file1.bed file2.bed";...145 days ago
- (base) [lege@hn1 testVisanu]$ conda create -n pythonENV python=3.10 scipy=1.13.0 astroid babel Channels: - conda-forge - bioconda - defaults Platform: linux-64 Collecting package metadata (repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
43 days ago
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