Results for "Syntax Error"
Bio-Scripts
(JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen s...1243 days ago
- (JitMetaENV) ➜ wgd git:(master) pip install --user ERROR: You must give at least one requirement to install (see "pip help install") (JitMetaENV) ➜ wgd git:(master) pip install --user . Pro...
1236 days ago
Parse the NCBI taxonomy database with Perl !
use Bio::DB::Taxonomy; use warnings; my $sps="human"; # Get one from a NCBI taxo...ches otherwise 0 #case-insesitive #Spelling mistake on classNode may leads to error sub recheck_class { my ($li...1201 days ago
- syntax: $output = open2(\*CHLD_OUT, \*CHLD_IN, 'command arg1 arg2'); It runs a process for both reading and writing and creates a pipe to both STDIN and STDOUT. It...
1191 days ago
- (JitMetaENV) ➜ test_phase_assebly conda install -c bioconda bwise Collecting packag...] [-t NB_CORES] [-o OUT_DIR] [-H HAPLO_MODE] [--version] [FATAL ERROR] BWISE requires at least a re...
1018 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/...may be done simultaneously. Error correction on multiple file...use as kmer data, but not for error- correct...perform error correction....nces below this are ignored. errorextensionreassemble=5 (eer) Ve...1004 days ago
- # make reference for randomreads.sh # randomreads.sh part...# make 30x haploid coverage for PacBio CLR reads # error rate from 13 - 15 % minimum 1...haploid coverage for PacBio reads for Hifi reads # error rate from 1 - 0.1 % minimum 9...
956 days ago
Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33...# make 30x haploid coverage for PacBio CLR reads # error rate from 13 - 15 % minimum 1...haploid coverage for PacBio reads for Hifi reads # error rate from 1 - 0.1 % minimum 9...946 days ago
- #!/bin/sh EXPECTED_CHECKSUM="$(php -r 'copy("https://composer.github.io/installer....;")" if [ "$EXPECTED_CHECKSUM" != "$ACTUAL_CHECKSUM" ] then >&2 echo 'ERROR: Invalid installer checksum'...
930 days ago
- #!/usr/bin/env Rscript library(RCircos) # usage: Rscript make_circos.r # parse args args = commandArgs(trailingOnly=TRUE) sv.file
327 days ago
