Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...::Copy', 'POSIX', 'Tie::File', 'Try::Tiny', 'Data::Dumper', 'File::Basename',...'File::Remove', 'Capture::Tiny', 'File::Temp', 'File::Spec::Functions', 'Statistic...1218 days ago
1216 days ago
Perl script to check modules installed !
...::Copy', 'POSIX', 'Tie::File', 'Try::Tiny', 'Data::Dumper', 'File::Basename',...'File::Remove', 'Capture::Tiny', 'File::Temp', 'File::Spec::Functions', 'Statistic...1213 days ago
Install htop in elementary/Ubuntu OS !
...K:~$ sudo apt-get install htop Reading package lists... Done Building dependency tree Reading st...remove and 0 not upgraded. Need to get 80.0 kB of archives. After this operation, 221 kB of additional d...1210 days ago
1205 days ago
Python script to download covid genome !
...t("downloading", nm) dna = Entrez.efetch(db='nucleotide',id=nm, rettype = 'fasta', retmode= 'text').r...ad().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/allseq.json", "w") as...1194 days ago
Install NCBI entrez-direct and esearch using conda !
$ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of c...1159 days ago
1112 days ago
1112 days ago
1112 days ago