Results for "NT"
Bio-Scripts
Install htop in elementary/Ubuntu OS !
...kB of additional disk space will be used. Get:1 http://in.archive.ubuntu.com/ubuntu bionic/main amd64 htop amd64....8.3-2ubuntu0.1) ... Processing triggers for gnome-menus (3.13.3-11ubuntu1.1) ... Processing triggers...1210 days ago
- ...install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen s...le solve. Solving environment: failed with repodata from current_repodata.json, will retry wit...
1206 days ago
Python script to download covid genome !
...https://www.ncbi.nlm.nih.gov/core/assets/genbank/files/ncov-sequences.yaml").text) seqs = seqs['genbank-sequences'] print("got %d sequences" % len(seqs)) from Bio import Entrez allseq = {} for x in seq...1195 days ago
Install NCBI entrez-direct and esearch using conda !
$ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda e...]/n)? y Downloading and Extracting Packages entrez-direct-13.9 | 5.2 MB...1160 days ago
Download genome using NCBI esearch command line !
...y "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda inst...1160 days ago
R script to visualize fastANI core-genome comparison
...ome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse command line arguments query_fasta=commandArgs(TRU...1160 days ago
- ...enovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda/label/cf201901 canu Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A new...
1113 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda shasta Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1113 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda csvtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1113 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda seqkit Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1113 days ago
