3666 days ago
3666 days ago
3666 days ago
Comment on "Does anyone have Nanopore latest updates?"
Long reads are here to rule. Thanks to Nick Loman from Birmingham UK, now we can have our first look at long reads from Oxford Nanopore. http://nextgenseek.com/2014/06/behold-oxford-nanopore-reads-are-here/3666 days ago
Comment on "Does anyone have Nanopore latest updates?"
More data and relevant paper: http://figshare.com/articles/The_second_Oxford_Nanopore_read_ever_published/1060188 http://omicfrontiers.com/category/nanopore http://arxiv.org/abs/1406.42143672 days ago
Comment on "R and Bioconductor Tutorial"
Phylogenetic capabilities in R http://www.r-bloggers.com/phylogenies-in-r-and-python/3681 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
...What is reference annotation, how to download it etc. Here are some resources that I found useful:ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/reference/ftp://ftp.ncbi.nlm...3684 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
...forge.net/Novoalign: http://www.novocraft.comBWA - Burrows-Wheeler Alignment Tool: http://maq.sourceforge.net/bwa-man.shtmlBWA-SW (general purpose local alignment tool): http://i.cs...3685 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutori...3686 days ago
Comment on "Perl one-liner for bioinformatician !!!"
Nice collection of Perl oneliner. Thank you for the useful list. You can also track other perl onliner posted on wire at http://bioinformaticsonline.com/thewire/tag/Oneliner3691 days ago