Bash script to download SRA file !
...rectly pull the sequence data (in paired FASTQ format) from the archive. fastq-dump...#SRA stores data in a particular compressed format (SRA!) that isn't directly co...cond mate in each pair. We'll use them in this format when aligning. wget ftp://...1602 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...=. -fstack-protector-strong -Wformat -Werror=format-security -Wdat...=. -fstack-protector-strong -Wformat -Werror=format-security -Wdat...ector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTI...=. -fstack-protector-strong -Wformat -Werror=format-security -Wdat...1593 days ago
To convert just one specific read group to fastq
...data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get the project run information. esearch -db sra -query $PROJECT | efetch -format runinfo > runinfo.txt # Se...1585 days ago
1568 days ago
Pack a perl program with their dependencies on Ubuntu !
...ency tree Reading state information... Done The following add...est script web.pl at https://bioinformaticsonline.com/snippets/view/41...oConTAMPR/bin$ ./web https://bioinformaticsonline.com #It return...ervices provided by the Bioinformatic Group of the Univ...1554 days ago
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1246 days ago
Install Install Gffcompare on Ubuntu / Linux
#Gffcompare is a program that is used to perform operations on general feature format (GFF) and general transfer format (GTF) files. It has a binary distribution compatible with the linux we’re using...866 days ago
834 days ago