Results for "AP"
Bio-Scripts
...b-1.9.tar.bz2&response-content-type=application%2Foctet-stream [foll...b-1.9.tar.bz2&response-content-type=application%2Foctet-stream Reso...g_padded.sam htslib-1.9/test/ce#unmap.sam htslib-1.9/test/ce#unmap...-Wall -O2 -I. -c -o test/test-vcf-api.o test/test-vcf-api.c gcc...2073 days ago
Installing Platypus on Ubuntu !
...st ➜ Platypus git:(master) sudo apt-get install python3-dev Rea...build_ext skipping 'cython/htslibWrapper.c' Cython extension (up-to...emp.linux-x86_64-2.7/cython/htslibWrapper.o -L./lib -L/home/urbe/ana...ict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototype...2073 days ago
- ...$0}' deduped_MA605.coverage > chr1_MA605.coverage #awk '$1 == 2 {print $0}' deduped_MA605.coverage > chr2_MA605.coverage #Rscript library(reshape) my.chr2...
2058 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
samtools index aln-pe.mapped.sorted.bam for i in $(samtools view -H aln-pe.mapped.sorted.bam | awk -F"\t" '/@SQ/{gsub(...nt $2}' ); do samtools view -b aln-pe.mapped.sorted.bam $i > aln-pe.map...trics.jar) R=data/Cdiff078.fa I=aln-pe.mapped.sorted.$i.bam O=aln-pe.map...2057 days ago
Setting up falconUnzip conda environments for genome assembly !
...KB conda-forge cryptography-2.3.1 | py27hdffb...68 KB conda-forge minimap2-2.14 | ha...conda-forge minimap2: 2.14-ha92aeb...ct a PacBio Field # # Applications Scientist or PacBio...2044 days ago
Perl script to split fasta sequence and create overlaps
#!/usr/bin/perl use strict; use warnings; my $len = 5000; my $over = 200; my $seq_id=$ARGV[0]; my $seqFile = $ARGV[1]; my $seq; open(my $fh, "2026 days ago
Backward Elimination with Python
#Backward Elimination with p-values only: import statsmodels.formula.api as sm def backwardElimination...ination with p-values and Adjusted R Squared: import statsmodels.formula.api as sm def backwardEliminati...2009 days ago
- bwa aln -t 8 targetGenome.fa reads.fastq | bwa samse targetGenome.fa - reads.fastq\ | samtools view -bt targetGenome.fa - | samtools sort - reads.bwa.targetGenome samtools index reads.bwa.targetGenome.bam
1888 days ago
- Download page https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download Ubuntu / Debian sudo apt-get install ncbi-blast+ CentOS # download l...
1815 days ago
- Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam
1779 days ago
