1272 days ago
1272 days ago
Create random 1000 CNVs in genome !
...been specified: cnv_max_size = 10000 [Sun Jan 10 16:24:20 2021] Introducing random CNVs with the following parameters: > cnv_count = 100 > cnv_gain_loss_ratio = 1 > duplicati...1268 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...cpp.o [ 6%] Building CXX object src/alignment/CMakeFiles/alignment.dir/GGAligner.cpp.o [ 8%] Building...cpp.o [ 9%] Building CXX object src/alignment/CMakeFiles/alignment.dir/GGAligner2.cpp.o [ 13%] Building...1260 days ago
Parse the NCBI taxonomy database with Perl !
...('homo_sapiens', 'metazoa'); #exit; #my $nam = $dbh->get_taxon(-name => $sps); $nam = $dbh->get_taxon(-taxonid => 9606); if(!$nam) { print "Try again with correct scientific nam...1229 days ago
1111 days ago
1103 days ago
Commandline for paired end reads simulation with BBMap !
...0.fq paired interleaved reads=100k length=250 mininsert=400 maxinsert=600 gaussian java -ea -Xmx162129m -...0.fq paired interleaved reads=100k length=250 mininsert=400 maxinsert=600 gaussian Executing align2.Rando...1047 days ago
Tadpole is 250x faster than SPADes assembler !
...(for overlapping paired-end reads only): merge=f Attempt to merge overlapping reads prior to kmer-counting, and again prior to correction. Outpu...1033 days ago
Commands to Remove White Space In Text Or String Using Awk And Sed In Linux
text=" ATGGTV AGTGACCTAGAGTGATGA G GGRTTT" echo "$text" | sed 's/ //g' OR echo "$text" | awk '{ gsub(/ /,""); print }' Return: ATGGTVAGTGACCTAGAGTGATGAGGGRTTT echo "...1013 days ago