Bash commandline to install Anaconda !
...Spent Left Speed 100 654M 100 654M 0 0 940k 0 0...installing: snappy-1.1.7-hbae5bb6_3 ... installing: xz-5.2...... installing: greenlet-0.4.15-py37h7b6447c_0 ... installin...0 ... installing: path.py-11.5.0-py37_0 ... installing: pyg...1615 days ago
Bash command to install Miniconda !
...x-x86_64.sh --2020-02-01 13:25:25-- https://repo.anaconda.com/...t-Linux-x86_64.sh' saved [71785000/71785000] (base) [wsu...- cryptography==2.8=py37h1ba5d50_0 - idna==2.8=py37_0...-64::cryptography-2.8-py37h1ba5d50_0 idna pk...1615 days ago
Bash command to install bwa, samtools, picard !
...| hed695b0_7 523 KB bioconda...pkgs/main/linux-64::perl-5.26.2-h14c3975_0 tbb...| h7b6447c_0 105 KB curl-7.67.0...ls_linux-64-2.33.1 | h9595d00_15 24 KB b...1615 days ago
Bash command to install GATK, Bedtools and SnpEff !
...| r36h96ca727_0 155 KB r-fansi-0.4.0...1.3.1 | r36h6115d3f_0 180 KB r-pk...arch::r-gplots-3.0.1.1-r36h6115d3f_0 r-gsalib pk...# | 100% r-kernsmooth-2.23_15 | 102 KB | ###############...1615 days ago
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Install Nucmer on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install mummer [sudo] password for jit:...12 not upgraded. Need to get 1,213 kB of archives. After this operation, 3,521 kB of additional disk space...1610 days ago
Install python pip and numpy on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ su...not upgraded. Need to get 31.5 MB of archives. After this o...n amd64 python-all amd64 2.7.15~rc1-1 [1,076 B]...Fetched 31.5 MB in 15s (2,151 kB/s)...g up libexpat1-dev:amd64 (2.2.5-3ubuntu0.2) ... Setting up l...1610 days ago