Results for "No"
Bio-Scripts
Installing Busco version 4.0.6
...owing NEW packages will be INSTALLED: _r-mutex conda-forge/noarch::_r-mutex-1.0.1-anacondar...bioconda/linux-64::blast-2.2.31-1 busco bioconda/noarch::busco-4.0.6-pyr36_0 b...1508 days ago
- ...age template for Spark tools (will NOT work on non-Spark tools) gatk Spark...etect copy number variants. AnnotateIntervals...rd) Collect whole genome sequencing-related metrics....to a new FASTA file. FindBadGenomicKmersSpark...
2130 days ago
- ...| 6 +- plugins/bgnotify/README.md...| 4 +- plugins/command-not-found/command-not-found.plug...in.zsh | 10 +-- plugins/geeknote/README.md...| 6 +- themes/agnoster.zsh-theme...
2130 days ago
Perl script to extract a sequence from multifasta with range !
...t300-lte600.fasta my $minlen = shift or die "Error: `minlen` parameter not provided\n"; my $maxlen = shift or die "Error: `maxlen` parameter not provided\n"; { local $...2121 days ago
Perl script to break the contigs by 'N'
...ce my $seq = $seqobj->seq; my $lenseq=length $seq; $seq = uc $seq; #now all bases are in uppercase...i=$end-$n+1; push(@regions,"$ini $end"); } $n=0; } } #Now, all regions without Ns are...2118 days ago
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2110 days ago
Generate simulated polyploid genome !
#Generate 3% divergence msbar -point 4 -count 16558 toy.fasta > toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheter...2108 days ago
Installing pb-assembly on Linux !
....4.0 bzip2/1.0.6-goalf-1.1.0-no-OFED...2016b FFTW/3.3.1-gompi-1.1.0-no-OFED...ScaLAPACK/1.8.0-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0...Time: 0:00:00 21.83 MB/s genomicconsens 100% |#############...2089 days ago
- (denovo_asm) [jnarayan@hmem00 ~]$ git clo...ath 'git-sym' already exists and is not an empty directory. (denovo_asm) [jnarayan@hmem00 ~]$ g...g deltas: 100% (398/398), done. (denovo_asm) [jnarayan@hmem00 ~]$ c...-examples/.git-sym') git: 'check-ignore' is not a git command. See...
2089 days ago
Perl script to create a consensus of nucleotide sequences !
...H{$a}->[$B]||0) || $prefOrder{$b} $prefOrder{$a} } qw/A T G C/ ]->[0]; } return @cons; } #reference https://www.perlmonks.org/bare/?node_id=5009622087 days ago
