Most Commonly used Awk by Bioinformatician
...1 in l{print $0"\t"l[$1]}' file2.txt > output.txt count number of occurrence of column 2 (uniq -c): awk '...x,l[x]}' input.txt apply "uniq" on column 2, only printing the first occurrence (uniq): awk '!($2 in l){prin...3964 days ago
Commercial and public next-gen-seq (NGS) software
...ls by aligning shotgun reads to the finished genome sequence. Highly repetitive elements are filtered out by ignoring those kmer words with high occurrence numbers. More tuned for ABI S...3571 days ago
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Perl script to count occurrence of a character !
#!/usr/bin/env perl # -*- coding: utf-8 -*- #!/usr/bin/perl use strict; use warnings; my %count_of; while ( ) { my @val = split "\t", $_; #my ( $w...1952 days ago
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