Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda insta...-blast-2.7.1+-win64.exe with your web browser. #If that FTP links does not work, try HTTP instead http://ftp....1175 days ago
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2721 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English;...=~ tr/ACGTUYRSWMKDVHBXN-/TGCAARYSWKMHBDVXN-/; # work on masked sequences as well...inue on if there's a good likelihood that this will work ## i.e. trimLength * (1-...2336 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, do...make && make install #Notice the prefix option, it is mandatory for this to work. The value of prefix option i...2126 days ago
2103 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ------------------------------...Octave/4.2.1-foss-2016a fireworks/python-2.7.3...y ISO compliant, intended for Research Use Only and not for use...y ISO compliant, intended for Research Use Only and not for use...2062 days ago
Setting up falconUnzip conda environments for genome assembly !
➜ Analysis_Results conda create -n denovo_asm Solving environment: done...d8_1 conda-forge networkx: 2.2-py_1...essarily ISO compliant, intended for Research...essarily ISO compliant, intended for Research Use Only and not for use...2018 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to...ou wanted to trim any number of duplicates down to a single letter, this would work: $string =~ s/(.)\1+/$1/gi1578 days ago
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