3982 days ago
Tools to detect synteny blocks regions among multiple genomes
...es which occur on the same chromosome are syntenic; however, syntenic genes may or may not be "link...ny server can be used for finding regions syntenic across multiple genomes and m...y matches between individual genes within syntenic blocks. SynBrowse ( http://w...2652 days ago
2816 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with th...2676 days ago
Identify genome-wide synteny with LASTZ alignment
...izes FFChr1.txt.sizes chr1.chain.filter.tnet chr1.chain.filter.qnet netSyntenic chr1.chain.filter.tnet chr1.c.... -qPrefix=query. chr1.chain.filter.tnet.synnet.axt.maf Step 3: Get syntenic markers perl Maf2rawsynten...559 days ago
Comment on "Sibelia: A comparative genomics tool"
...ed without any simplification. Boundaries correction --------------------- Algorithm of "Sibelia" depends on presence of solid k-mers within syntenic regions. If such regions con...1327 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html2016 days ago