Results for "unique"
Bio-Scripts
Perl script to remove the duplicate sequences from multifasta file
use strict; use Bio::SeqIO; my %unique; my $file = "myseqs.fa"; my $seqio = Bio::SeqI...s->display_id; my $seq = $seqs->seq; unless(exists($unique{$seq})) { $outseq->write_seq($seqs); $unique{$seq} +=1; } }2742 days ago
- ...nts. Checks if all read groups appear to come from the same individual. EstimateLibraryComplexity (Picard) Estimates the numbers of unique molecules in a sequencing lib...
2127 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...fix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o gcc -std=gnu99 -I/usr/shar...1602 days ago
Commandline for paired end reads simulation with BBMap !
...minscaf=1, midpad=500, nodisk=false] Set genScaffoldInfo=true Writing chunk 1 Waiting for writing to finish. Finished. snpRate=0.0, max=0, unique=true insRate=0.0, max=0, len...1042 days ago
Extract all fasta sequences except ids !
...t > omi_single_id.fa #cat omi and all the rest cat omi_single_id.fa filtered_without_omi.fasta > omi_single_id_plus_all.fa #Extract unique kmer ./uniquekmer -f omi_single_id_plus_all...880 days ago
- #!/bin/bash #Counting k-mers for different k echo "k,unique,distinct,total" for k in {1..15}; do kat hist -o phiX_$k.hist -m $k phiX.fasta >/dev/null 2>&1 egrep -v '^#' phiX_$k.hist|awk '{if ($1==1) u=$2; d+=$2; t+=$2*$1;}\ END{print "'$k',"u","d","t}' done
846 days ago
Raku script to find microsatellites in DNA fragments !
...bstring x $min-repeat-count) { @microsatellites.push($substring); } } } return @microsatellites.unique; } # Example usage my $g...146 days ago
