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Results for "
NGS%20data%20analysis
"
Wire posts
John Parker
@parker
NGS analysis pipeline http://www.egr.msu.edu/changroup/Protocols/NGS%20analysis%20example%20of%20a%20pipeline.html #Pipeline #NGS #Genomics #Tutorial
3644 days ago
Radha Agarkar
@radhaagarkar
Webinar http://webinars.sciencemag.org/webinar/archive/importance-bioinformatics-ngs #NGS #Webinar
3671 days ago
Jit
@jit.aber
Extract list of read ID from bam file: samtools view mbi.sorted.bam |perl -ne '/ID/ && print' > extractedID.sam #Extract #Ids #SAM #BAM #NGS
3659 days ago
Jit
@jit.aber
FastaQ 2 Fasta Oneliner: paste - - - -< totalRNA_placental_1.fastq | perl -pale'$_="@F[0..1]"'|tr "\^@" "\>" | perl -pale 's/\s/\n/g' #Oneliner #NGS #FastaQ #Fasta
3659 days ago
Jitendra Narayan
@admin
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. https://github.com/lh3/seqtk #FASTA #FASTAQ #NGS
3652 days ago
John Parker
@parker
Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet
3650 days ago
santosh pal
@santoshpal
Load the ShortRead and BiocParallel packages for NGS data analysis in R #bioconductor #R #qualitycheck
3650 days ago
Jitendra Narayan
@admin
R getting strong for NGS analysis http://manuals.bioinformatics.ucr.edu/home/ht-seq #Packages #NGS #R #Bioconductor #Bowtie #Sequence #Analysis #SNP
3648 days ago
Rahul Nayak
@rahul
NGSplot program allows you to easily visualize your NGS samples at functional genomic regions. https://code.google.com/p/ngsplot/ #NGS #ngs #Plot #ngsplot #Visualize #R
3648 days ago
Jitendra Narayan
@admin
Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS
3644 days ago
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