AliView: a fast and lightweight alignment viewer and editor for large data sets. http://bioinformatics.oxfordjournals.org/content/early/2014/08/05/bioinformatics.btu531.short #AliView
Reasonably fast method to compute the #patristic #distance between a pair of #species in a large tree http://blog.phytools.org/2015/10/new-reasonably-fast-method-to-compute.html
#Mappy provides a convenient #interface to #minimap2, a fast and accurate #C program to #align #genomic and transcribe nucleotide #sequences. https://pypi.org/project/mappy/