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Results for "Genome Sequence"

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• • Jit@jit.aber

  

  Estimate the genome size https://bioinformatics.uconn.edu/genome-size-estimation-tutorial/ #Genome #Size #Estimate

  2332 days ago

• • Jit@jit.aber

  

  Harness PacBio reads with assemblers https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Large-Genome-Assembly-with-PacBio-Long-Reads #Reads #Assemblers #PacBio

  2331 days ago

• • Rahul Nayak@rahul

  

  Ten steps to get started in #Genome #Assembly and #Annotation https://f1000research.com/articles/7-148/v1

  2313 days ago

• • Seema Singh@seema

  

  10,000 Plant genome sequencing project https://db.cngb.org/10kp/ #Plant #Genome #Sequencing

  2290 days ago

• • Rahul Nayak@rahul

  

  Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

  2305 days ago

• • Jit@jit.aber

  

  Parameters for accurate genome alignment https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829014/ #Alignment #Genome

  2275 days ago

• • Manisha Mishra@manisha

  

  Extract fasta with Ids. $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #extract #fasta #sequence #ids

  2271 days ago

• • Manisha Mishra@manisha

  

  Remove the sequence by fasta ids. awk 'BEGIN{while((getline<"ids.txt")>0)l[">"$1]=1}/^>/{f=!l[$1]}f' seq.fa #Remove #Delete #ids #fasta

  2271 days ago

• • Jit@jit.aber

  

  PacBio genome assembly tools https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbx147/4590140 #PacBio #Assembly #Tools #SMRT #LongReads

  2219 days ago

• • Shruti Paniwala@shruti

  

  Finding coding regions in DNA sequences http://genome.crg.es/courses/Lisbon04/exercises/day2/Perl_programming/index.html #Perl #Genes #Script

  2216 days ago

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