BOL

Results for "single-end"

Wire posts

• • Neelam Jha@neelam

  

  Multifasta to singleline fasta. $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multi #Single #Fasta #Convert

  2067 days ago

• • Abhimanyu Singh@abhimanyu

  

  #BLASTCLUST - BLAST score-based single-linkage #clustering. http://nebc.nerc.ac.uk/bioinformatics/documentation/blast/blastclust.html

  2065 days ago

• • BioJoker@biojoker

  

  #CheckM provides a set of tools for #assessing the #quality of #genomes recovered from isolates, single cells, or #metagenomes. http://ecogenomics.github.io/CheckM/

  1968 days ago

• • Jit@jit.aber

  

  fastq-pair: Match up paired end fastq files quickly and efficiently https://github.com/linsalrob/fastq-pair #fastq-pair #fastq

  1856 days ago

• • LEGE@lege

  

  #Estimate the #insert #size with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'

  1647 days ago

• • LEGE@lege

  

  Multiline to singleline covert. $ awk '/^>/ {printf("%s%s\t",(N>0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' < input.fa #Multi #Single #Convert #awk

  1646 days ago

• • Rahul Agarwal@raag

  

  https://www.cartana.se/ #Brain #Single #cell #sequencing

  1580 days ago

• • Rahul Agarwal@raag

  

  https://panglaodb.se/index.html #Single #Cell #database

  1580 days ago

• • Rahul Agarwal@raag

  

  https://github.com/AllonKleinLab/scrublet #Doublet #removal #single #cell

  1580 days ago

• • BioStar@biostar

  

  Enter newline at the end of the file $ sed -i -e '$a\' file #NewLine #Sed #Line #New

  1376 days ago

• « Previous
• 1
• 2
• 3
• 4
• Next »