Comment on "Alignment of closely related whole genomes/scaffolds"
Hmmm great link Rahul, You can also try Mugsy: fast multiple alignment of closely related whole genomes http://bioinformatics.oxfordjournals.org/content/27/3/334 In my works...3082 days ago
Comment on "List of popular bioinformatics software/tools"
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic...3100 days ago
3100 days ago
Comment on "R and Bioconductor Tutorial"
There are many othe useful turoial on R package creation, such as http://www.r-bloggers.com/creating-an-r-package-in-windows/ http://hilaryparker.com/2014/04/29/writing-an-r-package-from-scratch/ http://www.r-bloggers.com/how-to-create-an-r-package-in-windows/3235 days ago
Comment on "R and Bioconductor Tutorial"
Create the R package https://cran.r-project.org/doc/contrib/Leisch-CreatingPackages.pdf3236 days ago
Comment on "List of gene ontology software and tools"
...useful collection of GO tools. I found FuncAssociate also very useful. It is a web-based tool to help researchers use Gene Ontology attributes to characterize large sets of genes de...3245 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
A Fugu–Human Genome Synteny Viewer: web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes http://nar.oxfordjournals.org/content/32/8/2618.short3259 days ago
Comment on "Software packages for next gen sequence analysis"
DNAMAN uses fast alignment algorithms to assemble quickly and accurately a large number of overlapping sequences. This could be a nice tutorial for genome assemblies with overlapping sequences http://www.lynnon.com/pc/assembly.html3303 days ago
Comment on "Bio++ : C Language libraries for your biological need"
MafFilter is a program to process genome alignment in the Multiple Alignment Format. Current version is 1.1.2 http://biopp.univ-montp2.fr/forge/maffilter3303 days ago
Comment on "R and Bioconductor Tutorial"
Genes and genome with R https://www.ebi.ac.uk/training/sites/ebi.ac.uk.training/files/materials/2013/131021_HTS/genesandgenomes.pdf3304 days ago