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• • Shruti Paniwala@shruti

  

  #Extract #tabbed info from #BAM file with samtools: samtools view test.bam|awk '{print $1 "\t" $2 "\t" $3 "\t" $4 "\t" $4+length($10)-1}' > file.xls

  2935 days ago

• • Poonam Mahapatra@poonam

  

  #Extract #Chromosome #Number And Start Position #Reads: samtools view bamfile.bam|awk '{print $3 "\t" $4 "\t" $4+length($10)-1}' > newfile.tab

  2929 days ago

• • Jit@jit.aber

  

  #NGS basics http://deeptools.readthedocs.io/en/latest/content/help_glossary.html #Tutorial #Help

  2931 days ago

• • Jit@jit.aber

  

  Extract reference nucleotide from BAM file: samtools view your.bam | awk '{print substr( $10, 100, 1)}' #SAM #BAM #Samtools #Tricks #NGS

  2929 days ago

• • Jit@jit.aber

  

  #GATK and #Picard to filter low quality variants https://insidedna.me/tutorials/view/gatk-picard-filter-vcf-variants-snp

  2923 days ago

• • Neel@neelam

  

  #Upgrade the #perl in #Ubuntu $ sudo cpan cpan[1]> upgrade

  2909 days ago

• • Jit@jit.aber

  

  Install terminal on right click on Ubuntu: sudo apt-get install nautilus-open-terminal ; nautilus -q ; #Ubuntu #Linux #Terminal #Open

  2920 days ago

• • Abhi@abhinav

  

  Bioinformatics trainee needed at Kalyani http://www.klyuniv.ac.in/upload/employment/AdvtBIFCentre_9.9.2016.pdf #Trainee #Kaluani

  2847 days ago

• • Archana Malhotra@archana

  

  You can also try this on Ubuntu sudo perl -MCPAN -e 'upgrade'

  2909 days ago

• • Abhimanyu Singh@abhimanyu

  

  Leading edge analysis reports #Tags to indicate the percentage of #genes contributing to the #enrichment score, http://www.r-bloggers.com/leading-edge-analysis/ #R

  2908 days ago

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