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• • LEGE@lege

  

  #Ten simple #rules for helping newcomers become contributors to open #projects https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007296

  1747 days ago

• • Neel@neelam

  

  #Rename the #fasta #header and #keep first $ perl -ne 'if (/^(>\S+)/){print "$1\n";}else{print $_;}' realTestDATA.fa > realTestDATA_headerCorrected.fa #Perl

  1692 days ago

• • Jit@jit.aber

  

  This works and I dont know how :) perl -pe '}{$_=$.' filename #Perl #Magic #PerlMagic

  1686 days ago

• • LEGE@lege

  

  #Estimate the #insert #size with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'

  1683 days ago

• • LEGE@lege

  

  One can evaluate the accuracy of a mapper or a SNP caller with wgsim_eval.pl that comes with the package. #Evaluate #Mapping #SNP

  1683 days ago

• • Neel@neelam

  

  Perl onliner to add string to each of the fasta header. $ perl -p -e 's/^(>.*)$/$1-origin/g' in.fasta > out.fasta #String #Header #Fasta

  1678 days ago

• • Jit@jit.aber

  

  Perl script to run in parallel https://perlmaven.com/speed-up-calculation-by-running-in-parallel #Perl #Parallel #Script #Core #Thread

  1676 days ago

• • Jit@jit.aber

  

  A “#Forward #Genomics” Approach Links #Genotype to #Phenotype using Independent Phenotypic Losses among Related Species https://www.cell.com/cell-reports/fulltext/S2211-1247(12)00272-0

  1669 days ago

• • Rahul Agarwal@raag

  

  https://euraxess.ec.europa.eu/jobs/search?keywords=bioinformatics #bioinfo #job #europe

  1628 days ago

• • Rahul Nayak@rahul

  

  Analyse your sample with GATK pipeline. https://app.terra.bio/ #GATK

  1615 days ago

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