transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences http://www.biomedcentral.com/1471-2105/6/156/ #Align #Genome
AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads http://www.sciencedirect.com/science/article/pii/S0888754313001481
AliView: a fast and lightweight alignment viewer and editor for large data sets. http://bioinformatics.oxfordjournals.org/content/early/2014/08/05/bioinformatics.btu531.short #AliView
DaVIE: Database for the Visualization and Integration of Epigenetic data http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00325/abstract #Epigenetics #Visualization