Results for "small%20RNA-Seq"

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  • Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal

    2186 days ago

  • perl -e '$/="\n>"; while (<>) { s/>//g; my ($id, $seq) = split /\n/; print ">$_" if length $seq; }' < all_p_ctg.fasta > all_p_ctg_corrected.fasta #Convert #Fasta #Zero

    2181 days ago

  • Transcriptome assembly https://www.rna-seqblog.com/tag/transcriptome-assembly/ #RNA-seq #Transcriptome #Assembly

    2175 days ago

  • Informatics for #RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial/wiki #Scripts #Assembly

    1837 days ago

  • Transcript assembly and quantification for RNA-Seq https://github.com/mpertea/stringtie2 #Transcript #assembly

    1804 days ago

  • countTransformers: Transform Counts in RNA-Seq Data Analysis #transform #rna-seq #data #new #approach

    1599 days ago

  • #Convert #FASTQ to FASTA and set bases of #quality lower than 20 to N $ seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta

    1031 days ago

  • RNA seq tutorial https://github.com/griffithlab/rnaseq_tutorial #Tutorial #RNA_seq

    1028 days ago

  • #RepExpress: A Novel #Pipeline for the Quantification and Characterization of #Transposable #Element #Expression from RNA-seq Data https://pubmed.ncbi.nlm.nih.gov/34387946/

    1025 days ago