Public Databases for Bioinformatics !
...should store common data here e.g. genomes and indexes, annotations, ENCODE data if you dont want this...p.close() print "FINISHED" For use case 1 we obtained the following ENCODE and ROADMAP datasets htt...1166 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assay...ollowed by sequencing (ChIP-Seq). More information: https://genome.ucsc.edu/ENCODE/pilot.html3732 days ago
Awesome perl frameworks, libraries and software - PART 3
...utocomplete is a Perl module which gives you frequency (and optionally geolocation)-sensitive autocomplete suggestions based on your data audreyt/encode-hanconvert - [Perl] Modu...2521 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ly (and family ID) each variant hits, variant genomic location and coding effect (based on snpEff), loss-of-function mutation annotation, selected ENCODE annotation, allele frequency...2935 days ago
Genome Assembly Tools and Software - PART1 !!
...ment to an accuracy comparable to conventional mapping based pipelines (see evaluation in the tex directory). The assembly does not only encode SNPs and short INDELs, but al...2712 days ago
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MIT Computational Biology Group
...n with the Broad Institute and the Computational and Systems Biology initiative (CSBi) at MIT, our participation in the Epigenome Roadmap, ENCODE, and modENCODE consortia, and by several oth...3452 days ago
The Story of You: ENCODE and the human genome
...ow it's used to make different types of cells and different people. The ENCODE project, as it's called, is the latest chapter in the story of you. To read the ENCODE research papers and more, vis...3933 days ago
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Comment on "Comparative genomics educational material and papers bookmarks"
...lysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae—and the proteins they are predicted to encode—was undertaken in the c...2760 days ago
Comment on "Encode sequencing data freely available to download and use for academic means"
User can also find some useful ENCODE data at http://www.gencodegenes.org/releases/17.html3708 days ago