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Results for "pacBio"

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• • BioStar@biostar

  

  Comment on "Read Simulators"

  ...different sequencing technologies, including Illumina, Ion Torrent, and PacBio. PIRS allows users to customi...simulate reads from different sequencing platforms, including Illumina, PacBio, and Oxford Nanopore. It can...

  470 days ago

• • LEGE@lege

  

  Comment on "Short-read assembly using Spades !"

  ...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequenci...

  476 days ago

• • Rahul Agarwal@raag

  

  Comment on "China’s BGI says it can sequence a genome for just $100"

  https://xconomy.com/san-diego/2019/12/18/ftc-challenges-pacbio-acquisition-says-illumina-is-a-monopolist/

  1582 days ago

• • Rahul Nayak@rahul

  

  Comment on "Want to Know which genome assembler rule the world ?"

  Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).

  2005 days ago

• • Rahul Nayak@rahul

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  ...<number>[g|m|k] \ [other-options] \ [-pacbio-raw | -pacbio-corrected | -nanopore-raw | -...a higher number. The defaults are 0.300 for PacBio reads and 0.500 for Nanopore...erated with, and any processing performed: -pacbio-raw <files> Reads are s...

  2154 days ago

• • Jit@jit.aber

  

  Comment on "LAMSA: fast split read alignment with long approximate matches"

  ...within reads. [0.04] -T --read-type [STR] Specifiy the type of reads and set multiple parameters unless overriden. [null] (Illumina Moleculo) pacbio (PacBio SMRT): -i25 -l50 -m1 -M1 -O1,...

  2178 days ago

• • Rahul Nayak@rahul

  

  Comment on "Run miniasm assembler on nanopore reads !"

  ...;in the code below) for analyzing PacBio data. Minimap only accepts tw...2 -x ava-pb -t 23 \ 20170911_oly_pacbio_cat.fastq \ 20170911_oly_pac...\ -f \ /home/data/20170911_oly_pacbio_cat.fastq /home/data/20170911...170918_minimap2_mapping_fasta_oly_pacbio.paf 5 Run racon The output...

  2222 days ago

• • Poonam Mahapatra@poonam

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  ...t;number>[g|m|k] \ [other-options] \ [-pacbio-raw | -pacbio-corrected | -nanopore-raw | -...are specified by the technology they were generated with: -pacbio-raw <files>...

  2230 days ago