Results for "tools"
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RagTag: a collection of software tools for scaffolding and improving modern genome assemblies
RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: Homology-based misassembly correction Homology-based assembly scaffolding and patching Scaffold mergingTags: RagTag, software, tools, scaffolding, improving, modern, genome, assemblies
1010 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this here, or try it later on your own data. Get data We will use the same Illumina data as we used above: illumina_R1.fastq.gz: the Illumina forward reads illumina_R2.fastq.gz: the Illumina reve...Tags: spades, assembly, short, reads, genome, tools
868 days ago
Comparative genomics visualisation tools !
Comparative genomics visualisation tools !Tags: Comparative, genomics, genome, visualisation, view, see, plot, tools, tool
851 days ago
- Upset plots are a type of visualization used to analyze the intersection of sets or categories. They are particularly useful for displaying data with multiple categories and analyzing their overlaps. In an upset plot, each row represents a category or set, and each column represents a data point...
Tags: upset, plots, tools, draw, union, intersect
450 days ago
Bioinformatics tools for genome assembly !
There are numerous genome assembly tools available, each with its strengths and weaknesses. Here is a list of some widely used genome assembly tools as of my last update in September 2021: SPAdes: An assembler specifically designed for single-cell and multi-cell bacterial genomes, as well as...Tags: bioinformatics, tools, genome, assembly
329 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software and algorithms designed to accurately reconstruct the mitochondrial genome (mitogenome) from sequencing data, typically obtained through techniques like next-generation sequencing (NGS). The mitochondrial genome is relatively small comp...Tags: Mitochondrial, genome, assembly, tools
285 days ago
Bioinformatic tools for pathogens informatics at CVR
Novel sequencing and analytical approaches focused on studying viruses and virus-host interactions. Below you will find summaries and links to a number of bioinformatic tools that have been developed @ CVR. DIGS The database-integrated genome-screening (DIGS) tool provides a f...Tags: Bioinformatic, tools, pathogens, informatics, CVR
9 days ago
