1415 days ago
Comment on "Setting up autoConTAMPR !"
...ibc-bin (2.19-0ubuntu6.14) ...Reading package lists...Building dependency tree...Reading state information...The fo...istributions-perl (1.02-1) ...Reading package lists...Building d...ntu1) ...Setting up libstaden-read1 (1.13.5-1.1) ...Setting up l...1496 days ago
1574 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
Basic commands for genome assembly https://raw.githubusercontent.com/rrwick/Long-read-assembler-comparison/master/supplementary_figures/Fig_S04_commands.png1603 days ago
Comment on "The Raku Programming Language"
Interesting read https://perl6advent.wordpress.com/tag/bioinformatics/1604 days ago
Comment on "Complete genome sequence of Wuhan seafood market pneumonia virus is out !"
CBI teams at GenBank®, the Sequence Read Archive (SRA), NCBI Virus, and BLAST continue to rapidly process and release data associated with this outbreak as it becomes available.&...1606 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...and Health Benchmarking Team:Benchmarking tools, Manuscript, GitHub Sequencing Data:Data and analyses from most short, linked, and long read sequencing methods are public...1614 days ago
2153 days ago
Comment on "Installing Porechop on Ubuntu !"
...t; ONT_choppedNcorrected.fa Loading reads/media/urbe/MyDDrive/ONTdata/allONT/allONT.fasta1,634,477 reads loaded Looking for known ad...d) 79.2 76.0 Trimming adapters from read ends SQK-NSK007_Y_Top: AATGTA...,129 bp removed) 419,580 / 1,634,477 reads had adapters trimmed from th...2160 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1]...NT] Maximum allowed length of unaligned read part to trigger a bwt-based q...us [INT] Penalty for end-clipping. [5] Read options: -e --err-rate [FLOA...2177 days ago