BOL: Results for "splice"

Results for "splice"

- Strand@Strand
Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
...h Statistical approach and Splicing events detection. Strand NGS also supports novel discovery like identification of novel genes, exons and Novel splice junctions, alongside it can a...
2773 days ago
- BioStar@biostar
Bioinformatics tools for telomere to telomere assembly !
...Wenger)● JumboDB – tool for de Bruijn graph construction (Anton Bankevich @AntonBankevich)● uLTRA – tool for splice alignment of long transcripto...
1010 days ago

- Jit@jit.aber
Magic-BLAST: a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.
....nih.gov/pubmed/26109056), and recursive clipping of mismatches near the edges of the reads, which avoids accumulating artefactual mismatches near splice sites and is needed to distin...
2339 days ago
- Jit@jit.aber
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...nomic reads ./minimap2 -ax sr ref.fa read1.fa read2.fa > aln.sam # short genomic paired-end reads ./minimap2 -ax splice ref.fa rna-reads.fa > aln.sam # spliced long reads ./minimap2 -ax s...
2164 days ago
+4 more Bookmarks

- Jitendra Narayan@admin
Bioinformatics Definitions
...ain one continuous sequence; find the tranlation and transcription initiation sites, find promoter sites, define open reading frames (ORF); find splice sites, introns, exons; trans...
3965 days ago
- Jitendra Narayan@admin
Genomics for Bioinformatician
...;HMM A fast and accurate gene finder based on a GHMM architecture, developed specifically for eukaryotes. It incorporates splice site models adapted from the GeneSplicer program and uses interpolate...
3960 days ago
+4 more Top-level pages

- Jit@jit.aber
Rolf Backofen Lab
...d protein models, investigation of protein energy landscapes, detection of RNA sequence/structure motifs, prediction and evaluation of alternative splice forms, description and detect...
3958 days ago
- Manisha Mishra@manisha
Roderic Guigó Lab
Research in our group focuses on the investigation of the signals involved in gene specification in genomic sequences (promoter elements, splice sites, translation initiation sites, e...
3552 days ago

- Poonam Mahapatra@poonam
Comment on "New RNA Seq tool"
GenePattern offers a set of tools to support a wide variety of RNA-seq analyses, including short-read mapping, identification of splice junctions, transcript and isoform detection, qu...
3606 days ago
- Rahul Nayak@rahul
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.
3666 days ago