Results for "Index"
Tags
Unable to index fasta file with samtools !
I am unable to index fasta file with samtools ! It return "different line length in sequence" error message . How to fix it? nc@radha[Downloads] samtools faidx dedup.genome.scf.fasta_assembly.fna [][fai_build_core] different line length in sequence 'jcf7180000001219'.Could not build fai in...Tags: samtools, faidx, index, length, sequence
2307 days ago
Minimap warning "[WARNING] For a multi-part index, no @SQ lines will be outputted."
While mapping minimap2 return following warning: [WARNING] For a multi-part index, no @SQ lines will be outputted. How to resolve it.Tags: minimap2, warnings, @SQ, index
2180 days ago
[E::bwa_idx_load_from_disk] fail to locate the index files
I receive this error while mapping with BWA MEM ! How to fix it ?Tags: bwa, idx, load, disk, fail, locate, index, files
2102 days ago
How to resolve samtools index error "Chromosome blocks not continuous" ?
samtools index mappedPairs.sorted.bam return the following error ... [bam_sort_core] merging from 0 files and 2 in-memory blocks...[E::hts_idx_push] Chromosome blocks not continuoussamtools index: failed to create index for "mappedPairs.sorted.bam"Tags: samtools, index, sort, bam, reads
1053 days ago
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
PuffAligner, a fast, accurate and versatile aligner built on top of the Pufferfish index. PuffAligner is able to produce highly sensitive alignments, similar to those of Bowtie2, but much more quickly. While exhibiting similar speed to the ultrafast STAR aligner, PuffAligner requires considerably...Tags: PuffAligner, fast, efficient, accurate, aligner, Pufferfish, index
801 days ago
