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• • Jit@jit.aber

  

  Comment on "Ancestral sequence reconstruction steps !"

  Parallelization of MAFFT for large-scale multiple sequence alignmentshttps://academic.oup.com/bioinformatics/article/34/14/2490/4916099

  2357 days ago

• • Jit@jit.aber

  

  Comment on "LAMSA: fast split read alignment with long approximate matches"

  ...gments. [50] -i --seed-inv [INT] Distance between neighboring seeding fragments. [100] -p --max-loci [INT] Maximum allowed number...er of skeletons that are reserved in a cluster. [10] -R --max-reg [INT...] -b --end-bonus [INT] Penalty for end-clipping. [5] Read options: -...

  2358 days ago

• • Jit@jit.aber

  

  Comment on "MashMap: a fast and approximate software for mapping long reads (PacBio/ONT) or assembly to reference genome(s)"

  ...p is an approximate long read or contig mapper based on Jaccardsimilarity----------------...ef <value> an input reference file (fasta/fastq)[.gz] --r...--queryList <value> a file containing list of query files,...' or 'none' [default: map] 'map' computes best mappings for each...

  2358 days ago

• • Jit@jit.aber

  

  Comment on "Running Trinity on RNA-seq !"

  Once your assembly is complete, there are several ana...want to pursue to explore aspects of the biology of your orga...based on your assembled transcripts and the input RNA-Seq da...site to many other analyses such as examining differentially...batch effects, you'll want to catch them as early as possible...

  2359 days ago

• • Jit@jit.aber

  

  Comment on "Installing Perl environment on Linux"

  You migth need to install this   sudo conda install -c bioconda perl-app-cpanminus

  2362 days ago

• • Jit@jit.aber

  

  Comment on "Installing Perl environment on Linux"

  If Conda is installed   ...parallelLastz git:(master) ✗ conda create -n myLocalPerl perl perl...allelLastz git:(master) ✗ source activate myLocalPerl(myLocal...ite_perl/5.26.2 /home/urbe/anaconda3/envs/myLocalPerl/lib/5.2...Building and testing Devel-StackTrace-2.03 ... OKSuccessfully...

  2362 days ago

• • Jit@jit.aber

  

  Comment on "Installing Perl environment on Linux"

  curl -L http://cpanmin.us | perl - --sudo App::cpanminus The above is installing the "zero configuration CPAN modules installer" called cpanm. (Can take several minutes to install - don't break the process) and after - simply: cpanm Foo cpanm Module::One cpanm Another::Module

  2362 days ago

• • Rahul Nayak@rahul

  

  Comment on "Installing Salmon for Trinity !"

  Sometime, you need to provide the path  ➜ Tools git:(master) ✗ PATH=$PATH:/home/tools/anaconda3/bin ➜ Tools git:(master) ✗ export $PATH

  2363 days ago

• • Jit@jit.aber

  

  Comment on "AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data"

  AfterQC AfterQC - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. dupRad...es into a single report. NGSQC NGSQC: cross-platform qu...statistics for use in quality control pipelines, and an optio...

  2373 days ago

• • Jit@jit.aber

  

  Comment on "Ten International Scholarships for Indian Biotechnology and Bioinformatics Students"

  The Rhodes Scholarships for India Each year, there are five Scholarships available for India. https://www.rhodeshouse.ox.ac.uk/scholarships/apply/india

  2382 days ago

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