Results for "Genome"
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Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.4411 days ago
Comment on "Does anyone have Nanopore latest updates?"
Results from Oxford Nanopore's MinION are promising, but fall short of high expectations. Find more at nature news http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.147244432 days ago
Comment on "R and Bioconductor Tutorial"
...searches [1] Biostrings – Reading sequences in R [2] BSGenomes – Reading in complete genomes and BioC annotation data [3]...nnotations. rtracklayer – interface to online and other genome browsers. chipseq & ChIP...4433 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
r2cat (related reference based contig arrangement tool) can be used to order a set of contigs with respect to a single reference genome. This is done by mapping the contigs onto the r...4437 days ago
Comment on "Does anyone have Nanopore latest updates?"
Recently data from pocket-sized genome sequencer unveiled. Results from Oxford Nanopore's MinION are promising, but fall short of high expectations http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.147244483 days ago
- Thanks for the list of good genome browsers. But if someone is looking to do some sort of...nd interactive web pages for manipulating and displaying annotations on genomes. Find more at GBrowse wiki...
4572 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/early/2013/01/21/bib.bbs086.full4574 days ago
- UTGB (University of Tokyo Genome Browser) Toolkit is an open-source software for developing personalized genome browsers that work in web browsers. http://utgenome.org/
4581 days ago
Comment on "Five unique traits of effective computational biologist"
...in Academia. PLoS Comput Biol7(1): e1002001. [link] Oshlack A (2013) A 10-step guide to party conversation for bioinformaticians. Genome Biology14:104 [link] Via A,...4592 days ago
- Intitially, I use Perl for genome base parsing and analysis work, and found it quick and less cody. But, now a dayz I don't like perl, because I think it can induce to many bad-beha...
4647 days ago
